Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs1910170 | chr12:21204811 | T/A | 0 | 502 | 1.4 | 33.8 | 37.67 | KM Plot |
KIRC | rs1910191 | chr12:21171203 | C/T | 2.3E-7 | 506 | 7.85 | 30.2 | 37.7 | KM Plot |
KIRC | rs192543741 | chr4:107859038 | T/C | 6.45E-7 | 508 | 37.67 | 33.43 | 9.02 | KM Plot |
KIRC | rs1937126 | chr6:25769608 | G/C | 1.71E-9 | 500 | 3.37 | 36.57 | 37.73 | KM Plot |
KIRC | rs1938959 | chr11:105628753 | C/T | 7.63E-5 | 501 | 34.47 | 47.82 | 20.6 | KM Plot |
KIRC | rs1941558 | chr11:125425606 | C/T | 6.81E-6 | 507 | 1.43 | 37.6 | 37.4 | KM Plot |
KIRC | rs1982971 | chr4:68299968 | G/A | 4.6E-5 | 507 | 18.4 | 43.03 | 37.03 | KM Plot |
KIRC | rs1988943 | chr12:29442332 | A/T | 4.12E-9 | 502 | 37.7 | 33.93 | 6.07 | KM Plot |
KIRC | rs1992581 | chr4:186340863 | T/C | 5.26E-7 | 507 | 3.53 | 37.77 | 37.18 | KM Plot |
KIRC | rs1992582 | chr4:186340877 | T/A | 5.26E-7 | 507 | 3.53 | 37.77 | 37.18 | KM Plot |
KIRC | rs199530720 | chr4:107876433 | T/C | 3.63E-11 | 506 | 37.73 | 30.2 | 5.53 | KM Plot |
KIRC | rs199720199 | chr18:33207714 | C/CGAGCAT | 3.23E-5 | 509 | 37.75 | 31.77 | 7.37 | KM Plot |
KIRC | rs199798571 | chr1:62658019 | G/GT | 3.11E-5 | 504 | 37.03 | 42.33 | 8.17 | KM Plot |
KIRC | rs199855951 | chr2:67587192 | TA/T | 2.23E-7 | 506 | 37.37 | 37.73 | 2.03 | KM Plot |
KIRC | rs200019577 | chr2:67529851 | AC/A | 1.88E-7 | 503 | 37.47 | 36.65 | 2.03 | KM Plot |